PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23040.1
Common NameLR48_Vigan02g047700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 94aa    MW: 10462.7 Da    PI: 7.5253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081056246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+W++ + + + +a + + ++   +W+ +a  +g g+t+ ++k ++  
   Vang06g23040.1 10 GSWSAKDNKAFERALAVYDKDtpdRWNNVALAVG-GKTPDEVKRHYEL 56
                     89********************************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.293762IPR017884SANT domain
SMARTSM007173.2E-8860IPR001005SANT/Myb domain
PfamPF002498.1E-7955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-61165IPR009057Homeodomain-like
SuperFamilySSF466891.42E-121165IPR009057Homeodomain-like
CDDcd001671.34E-61158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSSMSATG SWSAKDNKAF ERALAVYDKD TPDRWNNVAL AVGGKTPDEV KRHYELLLRD  60
ITEIESGQVP FPNYKKTAES DEEGKRLKNM KLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-36193193RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513246.12e-63PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS32e-37RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0L9TV832e-64A0A0L9TV83_PHAAN; Uncharacterized protein
TrEMBLA0A0S3STR42e-64A0A0S3STR4_PHAAN; Uncharacterized protein
STRINGGLYMA02G18210.17e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-34RAD-like 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]